4E3Q PMP-bound form of Aminotransferase crystal structure from Vibrio fluvialis date
authors Midelfort, K.S., Kumar, R., Han, S., Karmilowicz, M.J., McConnell, K., Gehlhaar, D.K., Mistry, A., Chang, J.S., Anderson, M., Vilalobos, A., Minshull, J., Govindarajan, S., Wong, J.W.
compound source
symmetry
R_factor
R_Free 0.2098
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand BEN, MSE, NA, PMP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceRedesigning and characterizing the substrate specificity and activity of Vibrio fluvialis aminotransferase for the synthesis of imagabalin., Midelfort KS, Kumar R, Han S, Karmilowicz MJ, McConnell K, Gehlhaar DK, Mistry A, Chang JS, Anderson M, Villalobos A, Minshull J, Govindarajan S, Wong JW, Protein Eng Des Sel. 2012 Sep 25. PMID:23012440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (611 Kb) [Save to disk]
  • Biological Unit Coordinates (4e3q.pdb1.gz) 301 Kb
  • Biological Unit Coordinates (4e3q.pdb2.gz) 305 Kb
  • Biological Unit Coordinates (4e3q.pdb3.gz) 599 Kb
  • LPC: Ligand-Protein Contacts for 4E3Q
  • CSU: Contacts of Structural Units for 4E3Q
  • Structure Factors (1095 Kb)
  • Retrieve 4E3Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E3Q from S2C, [Save to disk]
  • Re-refined 4e3q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4E3Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4E3Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E3Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e3q_A] [4e3q_D] [4e3q] [4e3q_C] [4e3q_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4E3Q
  • Community annotation for 4E3Q at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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