4E4G Crystal structure of putative Methylmalonate-semialdehyde dehydrogenase from Sinorhizobium meliloti 1021 date 2012-03-12
authors Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Zenchek, W., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., NYSGRC, New.York.Structural.Genomics.Research.Consortium.
compound source
symmetry
R_factor
R_Free 0.2692
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1217 Kb) [Save to disk]
  • Biological Unit Coordinates (4e4g.pdb1.gz) 601 Kb
  • Biological Unit Coordinates (4e4g.pdb2.gz) 609 Kb
  • LPC: Ligand-Protein Contacts for 4E4G
  • CSU: Contacts of Structural Units for 4E4G
  • Structure Factors (1587 Kb)
  • Retrieve 4E4G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E4G from S2C, [Save to disk]
  • Re-refined 4e4g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E4G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E4G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E4G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e4g_D] [4e4g_G] [4e4g_E] [4e4g] [4e4g_F] [4e4g_C] [4e4g_A] [4e4g_H] [4e4g_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4E4G
  • Community annotation for 4E4G at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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