4E4N Transferase Transferase Inhibitor date Mar 13, 2012
title Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
authors C.Eigenbrot
compound source
Molecule: Tyrosine-Protein Kinase Jak1
Chain: A, B
Fragment: Protein Kinase Domain Jh1, Unp Residues 854-1154
Synonym: Janus Kinase 1, Jak-1
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jak1, Jak1a, Jak1b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.640 173.239 44.799 90.00 94.22 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 0NL, PTR BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification of Imidazo-pyrrolopyridines as Novel and Potent JAK1 Inhibitors., Kulagowski J, J Med Chem. 2012 May 16. PMID:22591402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (4e4n.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (4e4n.pdb2.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4E4N
  • CSU: Contacts of Structural Units for 4E4N
  • Structure Factors (630 Kb)
  • Retrieve 4E4N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E4N from S2C, [Save to disk]
  • Re-refined 4e4n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E4N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E4N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4E4N, from MSDmotif at EBI
  • Fold representative 4e4n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e4n_B] [4e4n] [4e4n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E4N: [TyrKc ] by SMART
  • Other resources with information on 4E4N
  • Community annotation for 4E4N at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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