4E59 Crystal structure of GCCGCCGC duplex date
authors Kiliszek, A., Kierzek, R., Krzyzosiak, W.J., Rypniewski, W.
compound source
R_Free 0.3035
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.54
Primary referenceCrystallographic characterization of CCG repeats., Kiliszek A, Kierzek R, Krzyzosiak WJ, Rypniewski W, Nucleic Acids Res. 2012 Sep;40(16):8155-62. doi: 10.1093/nar/gks557. Epub 2012, Jun 19. PMID:22718980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (4e59.pdb1.gz) 6 Kb
  • Biological Unit Coordinates (4e59.pdb2.gz) 13 Kb
  • CSU: Contacts of Structural Units for 4E59
  • Structure Factors (31 Kb)
  • Retrieve 4E59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E59 from S2C, [Save to disk]
  • Re-refined 4e59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E59
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E59, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e59] [4e59_B] [4e59_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4E59
  • Community annotation for 4E59 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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