4E5P Thermostable phosphite dehydrogenase A176R variant in complex with NAD date
authors Zou, Y., Zhang, H., Nair, S.K.
compound source
symmetry
R_factor
R_Free 0.24138
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand NAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structures of phosphite dehydrogenase provide insights into nicotinamide cofactor regeneration., Zou Y, Zhang H, Brunzelle JS, Johannes TW, Woodyer R, Hung JE, Nair N, van der Donk WA, Zhao H, Nair SK, Biochemistry. 2012 May 29;51(21):4263-70. Epub 2012 May 17. PMID:22564171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (341 Kb) [Save to disk]
  • Biological Unit Coordinates (4e5p.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (4e5p.pdb2.gz) 114 Kb
  • Biological Unit Coordinates (4e5p.pdb3.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 4E5P
  • CSU: Contacts of Structural Units for 4E5P
  • Structure Factors (1332 Kb)
  • Retrieve 4E5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E5P from S2C, [Save to disk]
  • Re-refined 4e5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4E5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4E5P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E5P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e5p_A] [4e5p_B] [4e5p_C] [4e5p_D] [4e5p_F] [4e5p_E] [4e5p]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4E5P
  • Community annotation for 4E5P at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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