4E5W Transferase Transferase Inhibitor date Mar 14, 2012
title Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
authors J.M.Murray
compound source
Molecule: Tyrosine-Protein Kinase Jak1
Chain: A, B
Fragment: Kinase Domain, Unp Residues 854-1154
Synonym: Janus Kinase 1, Jak-1
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jak1, Jak1a, Jak1b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.080 173.730 44.450 90.00 92.59 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand 0NT, PEG, PTR BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification of Imidazo-pyrrolopyridines as Novel and Potent JAK1 Inhibitors., Kulagowski J, J Med Chem. 2012 May 16. PMID:22591402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (4e5w.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 4E5W
  • CSU: Contacts of Structural Units for 4E5W
  • Structure Factors (1152 Kb)
  • Retrieve 4E5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E5W from S2C, [Save to disk]
  • Re-refined 4e5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E5W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4E5W, from MSDmotif at EBI
  • Fold representative 4e5w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e5w_B] [4e5w] [4e5w_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E5W: [TyrKc ] by SMART
  • Other resources with information on 4E5W
  • Community annotation for 4E5W at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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