4E5Z Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair date
authors Yeh, J.I., Du, S.
compound source
symmetry
R_factor
R_Free 0.2840
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.22
ligand 3DR enzyme
Gene DDB1 (H. sapiens)
Gene
Ontology
ChainFunctionProcessComponent
A


B


Disease Xeroderma pigmentosum, group E, subtype 2 OMIM:600045
Primary referenceDamaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair., Yeh JI, Levine AS, Du S, Chinte U, Ghodke H, Wang H, Shi H, Hsieh CL, Conway JF, Van Houten B, Rapic-Otrin V, Proc Natl Acad Sci U S A. 2012 Jul 20. PMID:22822215
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (539 Kb) [Save to disk]
  • Biological Unit Coordinates (4e5z.pdb1.gz) 530 Kb
  • LPC: Ligand-Protein Contacts for 4E5Z
  • CSU: Contacts of Structural Units for 4E5Z
  • Structure Factors (272 Kb)
  • Retrieve 4E5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E5Z from S2C, [Save to disk]
  • Re-refined 4e5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E5Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E5Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e5z_G] [4e5z_A] [4e5z_B] [4e5z] [4e5z_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E5Z: [WD40 ] by SMART
  • Other resources with information on 4E5Z
  • Community annotation for 4E5Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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