4E60 Dna date Mar 15, 2012
title Interactions Of Ba2+ With A Non-Self-Complementary Z-Type Dn
authors P.K.Mandal, S.Venkadesh, N.Gautham
compound source
Molecule: Dna (5'-D(Cpapcpgpcpg)-3')
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'-D(Cpgpcpgptpg)-3')
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'-D(Ptpg)-3')
Chain: C, D
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 65
R_factor 0.215 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.177 35.177 44.341 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.86 Å
ligand BA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (4e60.pdb1.gz) 5 Kb
  • Biological Unit Coordinates (4e60.pdb2.gz) 2 Kb
  • LPC: Ligand-Protein Contacts for 4E60
  • CSU: Contacts of Structural Units for 4E60
  • Structure Factors (34 Kb)
  • Retrieve 4E60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E60 from S2C, [Save to disk]
  • Re-refined 4e60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E60
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4E60, from MSDmotif at EBI
  • Fold representative 4e60 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e60_D] [4e60_A] [4e60] [4e60_C] [4e60_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4E60
  • Community annotation for 4E60 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science