4E6N Crystal structure of bacterial Pnkp-C/Hen1-N heterodimer date 2012-03-15
authors Huang, R.H., Wang, P.
compound source
symmetry
R_factor
R_Free 0.2225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.39
ligand AMP, MG enzyme
Gene CTHE ; CTHE
Primary referenceMolecular basis of bacterial protein Hen1 activating the ligase activity of bacterial protein Pnkp for RNA repair., Wang P, Chan CM, Christensen D, Zhang C, Selvadurai K, Huang RH, Proc Natl Acad Sci U S A. 2012 Jul 30. PMID:22847431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (4e6n.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (4e6n.pdb2.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 4E6N
  • CSU: Contacts of Structural Units for 4E6N
  • Structure Factors (372 Kb)
  • Retrieve 4E6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E6N from S2C, [Save to disk]
  • Re-refined 4e6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E6N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E6N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e6n_A] [4e6n_C] [4e6n_D] [4e6n_B] [4e6n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4E6N
  • Community annotation for 4E6N at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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