4E80 Structural Basis for the Activity of a Cytoplasmic RNA Terminal U-transferase date
authors Yates, L.A., Fleurdepine, S., Rissland, O.S., DeColibus, L., Harlos, K., Norbury, C.J., Gilbert, R.J.C.
compound source
symmetry
R_factor
R_Free 0.2011
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.02
ligand UTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for the activity of a cytoplasmic RNA terminal uridylyl transferase., Yates LA, Fleurdepine S, Rissland OS, De Colibus L, Harlos K, Norbury CJ, Gilbert RJ, Nat Struct Mol Biol. 2012 Jul 1. doi: 10.1038/nsmb.2329. PMID:22751018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (439 Kb) [Save to disk]
  • Biological Unit Coordinates (4e80.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (4e80.pdb2.gz) 107 Kb
  • Biological Unit Coordinates (4e80.pdb3.gz) 113 Kb
  • Biological Unit Coordinates (4e80.pdb4.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 4E80
  • CSU: Contacts of Structural Units for 4E80
  • Structure Factors (498 Kb)
  • Retrieve 4E80 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E80 from S2C, [Save to disk]
  • Re-refined 4e80 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4E80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4E80
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E80, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e80_C] [4e80] [4e80_B] [4e80_D] [4e80_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4E80
  • Community annotation for 4E80 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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