4E99 Transport Protein date Mar 20, 2012
title Human Serum Albumin Complex With Perfluorooctane Sulfonate P
authors Z.P.Luo, X.L.Shi, M.D.Huang
compound source
Molecule: Serum Albumin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alb
Expression_system: Komagataella Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 1 21 1
R_factor 0.238 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.466 83.756 56.004 90.00 103.50 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand P8S enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural evidence of perfluorooctane sulfonate transport by human serum albumin., Luo Z, Shi X, Hu Q, Zhao B, Huang M, Chem Res Toxicol. 2012 May 21;25(5):990-2. Epub 2012 Apr 16. PMID:22482699
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (4e99.pdb1.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 4E99
  • CSU: Contacts of Structural Units for 4E99
  • Structure Factors (241 Kb)
  • Retrieve 4E99 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E99 from S2C, [Save to disk]
  • Re-refined 4e99 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E99 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E99
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4E99, from MSDmotif at EBI
  • Fold representative 4e99 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e99_A] [4e99]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E99: [ALBUMIN ] by SMART
  • Other resources with information on 4E99
  • Community annotation for 4E99 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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