4EBB	Structure of DPP2	date	2012-03-23
authors	Shewchuk, L.M., Hassell, A.H., Sweitzer, S.M., Sweitzer, T.D., McDevitt, P.J., Kennedy-Wilson, K.M., Johanson, K.O.
compound		source
symmetry		R_factor R_Free 0.22997
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.00
ligand	MSE, NAG, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structures of Human DPP7 Reveal the Molecular Basis of Specific Inhibition and the Architectural Diversity of Proline-Specific Peptidases., Bezerra GA, Dobrovetsky E, Dong A, Seitova A, Crombett L, Shewchuk LM, Hassell AM, Sweitzer SM, Sweitzer TD, McDevitt PJ, Johanson KO, Kennedy-Wilson KM, Cossar D, Bochkarev A, Gruber K, Dhe-Paganon S, PLoS One. 2012;7(8):e43019. Epub 2012 Aug 29. PMID:22952628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk] Biological Unit Coordinates (4ebb.pdb1.gz) 150 Kb Biological Unit Coordinates (4ebb.pdb2.gz) 146 Kb Biological Unit Coordinates (4ebb.pdb3.gz) 294 Kb Biological Unit Coordinates (4ebb.pdb4.gz) 294 Kb LPC: Ligand-Protein Contacts for 4EBB CSU: Contacts of Structural Units for 4EBB Structure Factors (1093 Kb) Retrieve 4EBB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4EBB from S2C, [Save to disk] Re-refined 4ebb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4EBB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4EBB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4EBB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ebb_B] [4ebb_A] [4ebb] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4EBB

Community annotation for 4EBB at PDBWiki (http://pdbwiki.org)

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Images from IMB Jena Image Library of Biological Macromolecules.

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