4ED5 Rna Binding Protein Rna date Mar 27, 2012
title Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur C With Rna
authors H.Wang, F.Zeng, Q.Liu, L.Niu, M.Teng, X.Li
compound source
Molecule: Elav-Like Protein 1
Chain: A, B
Fragment: Rrm1rrm2 Domains, Unp Residues 18-186
Synonym: Hu-Antigen R, Hur
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elavl1, Hur
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-R(Aupupupupupapupupupu)-3'
Chain: C, D
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.209 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.770 62.750 53.290 90.00 111.89 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EDO, GOL, M2M enzyme
Primary referenceThe structure of the ARE-binding domains of Hu antigen R (HuR) undergoes conformational changes during RNA binding., Wang H, Zeng F, Liu Q, Liu H, Liu Z, Niu L, Teng M, Li X, Acta Crystallogr D Biol Crystallogr. 2013 Mar;69(Pt 3):373-80. doi:, 10.1107/S0907444912047828. Epub 2013 Feb 16. PMID:23519412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (4ed5.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (4ed5.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4ED5
  • CSU: Contacts of Structural Units for 4ED5
  • Structure Factors (1195 Kb)
  • Retrieve 4ED5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ED5 from S2C, [Save to disk]
  • Re-refined 4ed5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ED5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ED5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4ED5, from MSDmotif at EBI
  • Fold representative 4ed5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ed5_C] [4ed5] [4ed5_A] [4ed5_B] [4ed5_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ED5: [RRM ] by SMART
  • Other resources with information on 4ED5
  • Community annotation for 4ED5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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