4ED5 Rna Binding Protein Rna date Mar 27, 2012
title Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur C With Rna
authors H.Wang, F.Zeng, Q.Liu, L.Niu, M.Teng, X.Li
compound source
Molecule: Elav-Like Protein 1
Chain: A, B
Fragment: Rrm1rrm2 Domains, Unp Residues 18-186
Synonym: Hu-Antigen R, Hur
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elavl1, Hur
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-R(Aupupupupupapupupupu)-3'
Chain: C, D
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.209 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.770 62.750 53.290 90.00 111.89 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EDO, GOL, M2M enzyme
Primary referenceThe structure of the ARE-binding domains of Hu antigen R (HuR) undergoes conformational changes during RNA binding., Wang H, Zeng F, Liu Q, Liu H, Liu Z, Niu L, Teng M, Li X, Acta Crystallogr D Biol Crystallogr. 2013 Mar;69(Pt 3):373-80. doi:, 10.1107/S0907444912047828. Epub 2013 Feb 16. PMID:23519412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (4ed5.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (4ed5.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4ED5
  • CSU: Contacts of Structural Units for 4ED5
  • Structure Factors (1195 Kb)
  • Retrieve 4ED5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ED5 from S2C, [Save to disk]
  • Re-refined 4ed5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ED5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ED5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4ED5, from MSDmotif at EBI
  • Fold representative 4ed5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ed5_C] [4ed5] [4ed5_A] [4ed5_B] [4ed5_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ED5: [RRM ] by SMART
  • Alignments of the sequence of 4ED5 with the sequences similar proteins can be viewed for 4ED5's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 4ED5
  • Community annotation for 4ED5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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