4EDL Signaling Protein date Mar 27, 2012
title Crystal Structure Of Beta-Parvin Ch2 Domain
authors A.L.Stiegler, K.M.Draheim, X.Li, N.E.Chayen, D.A.Calderwood, T.J.
compound source
Molecule: Beta-Parvin
Chain: A, B, C, D, E, F
Fragment: C-Terminal Calponin Homology Domain
Synonym: Affixin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parvb, Cgi-56
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdfduet-1
symmetry Space Group: P 1 21 1
R_factor 0.215 R_Free 0.266
length a length b length c angle alpha angle beta angle gamma
80.893 52.584 82.331 90.00 101.49 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand EDO enzyme
F, A, D, C, E, B

Primary referenceStructural Basis for Paxillin Binding and Focal Adhesion Targeting of beta-Parvin., Stiegler AL, Draheim KM, Li X, Chayen NE, Calderwood DA, Boggon TJ, J Biol Chem. 2012 Sep 21;287(39):32566-77. Epub 2012 Aug 6. PMID:22869380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (4edl.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (4edl.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (4edl.pdb3.gz) 46 Kb
  • Biological Unit Coordinates (4edl.pdb4.gz) 47 Kb
  • Biological Unit Coordinates (4edl.pdb5.gz) 47 Kb
  • Biological Unit Coordinates (4edl.pdb6.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4EDL
  • CSU: Contacts of Structural Units for 4EDL
  • Structure Factors (510 Kb)
  • Retrieve 4EDL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EDL from S2C, [Save to disk]
  • Re-refined 4edl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EDL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EDL, from MSDmotif at EBI
  • Fold representative 4edl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4edl_C] [4edl_A] [4edl_B] [4edl_D] [4edl_E] [4edl_F] [4edl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EDL: [CH ] by SMART
  • Other resources with information on 4EDL
  • Community annotation for 4EDL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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