4EDW Immune System date Mar 27, 2012
title Nerve Growth Factor In Complex With Fab From Humanized Versi Mouse Mab 911 (Tanezumab)
authors C.Eigenbrot, M.Ultsch
compound source
Molecule: Beta-Nerve Growth Factor
Chain: V
Synonym: Beta-Ngf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ngf, Ngfb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tanezumab Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tanezumab Fab Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.200 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.700 92.707 252.729 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
V


Primary referenceGeneration of a high-fidelity antibody against nerve growth factor using library scanning mutagenesis and validation with structures of the initial and optimized Fab-antigen complexes., La Porte SL, Eigenbrot C, Ultsch M, Ho WH, Foletti D, Forgie A, Lindquist KC, Shelton DL, Pons J, MAbs. 2014 Jul-Aug;6(4):1059-68. PMID:24830649
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (4edw.pdb1.gz) 176 Kb
  • LPC: Ligand-Protein Contacts for 4EDW
  • CSU: Contacts of Structural Units for 4EDW
  • Structure Factors (326 Kb)
  • Retrieve 4EDW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EDW from S2C, [Save to disk]
  • Re-refined 4edw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EDW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EDW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EDW, from MSDmotif at EBI
  • Fold representative 4edw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4edw_L] [4edw_V] [4edw_H] [4edw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4EDW: [IG_like] [IGv] [NGF ] by SMART
  • Other resources with information on 4EDW
  • Community annotation for 4EDW at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science