4EEY Crystal structure of human DNA polymerase eta in ternary complex with a cisplatin DNA adduct date 2012-03-28
authors Ummat, A., Rechkoblit, O., Jain, R., Choudhury, J.R., Johnson, R.E., Silverstein, T.D., Buku, A., Lone, S., Prakash, L., Prakash, S., Aggarwal, A.K.
compound source
symmetry
R_factor
R_Free 0.23253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.32
ligand CPT, DCP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for cisplatin DNA damage tolerance by human polymerase eta during cancer chemotherapy., Ummat A, Rechkoblit O, Jain R, Roy Choudhury J, Johnson RE, Silverstein TD, Buku A, Lone S, Prakash L, Prakash S, Aggarwal AK, Nat Struct Mol Biol. 2012 May 6;19(6):628-32. doi: 10.1038/nsmb.2295. PMID:22562137
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (4eey.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 4EEY
  • CSU: Contacts of Structural Units for 4EEY
  • Structure Factors (749 Kb)
  • Retrieve 4EEY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EEY from S2C, [Save to disk]
  • Re-refined 4eey structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EEY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EEY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EEY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eey] [4eey_P] [4eey_T] [4eey_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4EEY
  • Community annotation for 4EEY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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