4EFL Crystal structure of H-Ras WT in complex with GppNHp (state 1) date
authors Muraoka, S., Shima, F., Araki, M., Inoue, T., Yoshimoto, A., Ijiri, Y., Seki, N., Tamura, A., Kumasaka, T., Yamamoto, M., Kataoka, T.
compound source
symmetry
R_factor
R_Free 0.20433
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants., Muraoka S, Shima F, Araki M, Inoue T, Yoshimoto A, Ijiri Y, Seki N, Tamura A, Kumasaka T, Yamamoto M, Kataoka T, FEBS Lett. 2012 Jun 12;586(12):1715-8. Epub 2012 May 11. PMID:22584058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (4efl.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 4EFL
  • CSU: Contacts of Structural Units for 4EFL
  • Structure Factors (203 Kb)
  • Retrieve 4EFL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EFL from S2C, [Save to disk]
  • Re-refined 4efl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EFL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EFL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EFL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4efl_A] [4efl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EFL: [RAS ] by SMART
  • Other resources with information on 4EFL
  • Community annotation for 4EFL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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