4EGC Transcription Hydrolase date Mar 30, 2012
title Crystal Structure Of Mbp-Fused Human Six1 Bound To Human Eya Domain
authors R.Zhao, A.N.Patrick
compound source
Molecule: Maltose-Binding Periplasmic Protein, Homeobox Pro Chimera;
Chain: A
Fragment: See Remark 999
Synonym: Mbp, Mmbp, Maltodextrin-Binding Protein, Sine Ocul Homeobox Homolog 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_common: Human
Organism_taxid: 562, 9606
Gene: B4034, Jw3994, Male, Mbp, Six1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xa-90
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmalx_b

Molecule: Eyes Absent Homolog 2
Chain: B
Fragment: Eya Domain (Unp Residues 253-538)
Synonym: Eya2
Ec: 3.1.3.48
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eab1, Eya2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xa-90
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 21 21 2
R_factor 0.184 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.207 150.180 53.921 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand MAL, MG enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure-function analyses of the human SIX1-EYA2 complex reveal insights into metastasis and BOR syndrome., Patrick AN, Cabrera JH, Smith AL, Chen XS, Ford HL, Zhao R, Nat Struct Mol Biol. 2013 Feb 24. doi: 10.1038/nsmb.2505. PMID:23435380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (4egc.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4EGC
  • CSU: Contacts of Structural Units for 4EGC
  • Structure Factors (2620 Kb)
  • Retrieve 4EGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EGC from S2C, [Save to disk]
  • Re-refined 4egc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EGC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EGC, from MSDmotif at EBI
  • Fold representative 4egc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4egc_A] [4egc] [4egc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EGC: [HOX ] by SMART
  • Other resources with information on 4EGC
  • Community annotation for 4EGC at PDBWiki (http://pdbwiki.org)

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