4EGC Transcription Hydrolase date Mar 30, 2012
title Crystal Structure Of Mbp-Fused Human Six1 Bound To Human Eya Domain
authors R.Zhao, A.N.Patrick
compound source
Molecule: Maltose-Binding Periplasmic Protein, Homeobox Pro Chimera;
Chain: A
Fragment: See Remark 999
Synonym: Mbp, Mmbp, Maltodextrin-Binding Protein, Sine Ocul Homeobox Homolog 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_common: Human
Organism_taxid: 562, 9606
Gene: B4034, Jw3994, Male, Mbp, Six1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xa-90
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmalx_b

Molecule: Eyes Absent Homolog 2
Chain: B
Fragment: Eya Domain (Unp Residues 253-538)
Synonym: Eya2
Ec: 3.1.3.48
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eab1, Eya2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xa-90
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 21 21 2
R_factor 0.184 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.207 150.180 53.921 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand MAL, MG enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-function analyses of the human SIX1-EYA2 complex reveal insights into metastasis and BOR syndrome., Patrick AN, Cabrera JH, Smith AL, Chen XS, Ford HL, Zhao R, Nat Struct Mol Biol. 2013 Feb 24. doi: 10.1038/nsmb.2505. PMID:23435380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (4egc.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 4EGC
  • CSU: Contacts of Structural Units for 4EGC
  • Structure Factors (2620 Kb)
  • Retrieve 4EGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EGC from S2C, [Save to disk]
  • Re-refined 4egc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EGC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EGC, from MSDmotif at EBI
  • Fold representative 4egc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4egc_A] [4egc] [4egc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EGC: [HOX ] by SMART
  • Alignments of the sequence of 4EGC with the sequences similar proteins can be viewed for 4EGC's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 4EGC
  • Community annotation for 4EGC at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science