4EGK Hydrolase Hydrolase Inhibitor date Mar 31, 2012
title Human Hsp90-Alpha Atpase Domain Bound To Radicicol
authors W.J.Chen, S.P.Wood
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain, Residues 9-236
Synonym: Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Carcinoma Ny-Ren-38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 1 21 1
R_factor 0.201 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.440 43.880 53.640 90.00 113.81 90.00
method X-Ray Diffractionresolution 1.69 Å
ligand RDC BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment Screening Using Capillary Electrophoresis (CEfrag) for Hit Identification of Heat Shock Protein 90 ATPase Inhibitors., Austin C, Pettit SN, Magnolo SK, Sanvoisin J, Chen W, Wood SP, Freeman LD, Pengelly RJ, Hughes DE, J Biomol Screen. 2012 May 9. PMID:22573733
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4egk.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4EGK
  • CSU: Contacts of Structural Units for 4EGK
  • Structure Factors (345 Kb)
  • Retrieve 4EGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EGK from S2C, [Save to disk]
  • Re-refined 4egk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EGK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EGK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EGK, from MSDmotif at EBI
  • Fold representative 4egk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4egk_A] [4egk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EGK: [HATPase_c ] by SMART
  • Other resources with information on 4EGK
  • Community annotation for 4EGK at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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