4EGL Rna Binding Protein date Mar 31, 2012
title Crystal Structure Of Two Tandem Rna Recognition Motifs Of Hu Antigen R
authors H.Wang, F.Zeng, H.Liu, M.Teng, X.Li
compound source
Molecule: Elav-Like Protein 1
Chain: A
Fragment: N-Terminal Rrm1 And Rrm2 Domain, Unp Residues 18-
Synonym: Hu-Antigen R, Hur
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Elavl1, Hur
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 2
R_factor 0.263 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.181 132.724 31.102 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand GOL, MLY, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4egl.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4EGL
  • CSU: Contacts of Structural Units for 4EGL
  • Structure Factors (49 Kb)
  • Retrieve 4EGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EGL from S2C, [Save to disk]
  • Re-refined 4egl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EGL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EGL, from MSDmotif at EBI
  • Fold representative 4egl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4egl_A] [4egl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 4EGL with the sequences similar proteins can be viewed for 4EGL's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 4EGL
  • Community annotation for 4EGL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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