4EJX Structure of ceruloplasmin-myeloperoxidase complex date
authors Samygina, V.R., Sokolov, A.V., Bourenkov, G., Vasilyev, V.B., Bartunik, H.
compound source
symmetry
R_factor
R_Free 0.40063
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.69
ligand BMA, CU, HEM, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


D, B


Primary referenceCeruloplasmin: macromolecular assemblies with iron-containing acute phase proteins., Samygina VR, Sokolov AV, Bourenkov G, Petoukhov MV, Pulina MO, Zakharova ET, Vasilyev VB, Bartunik H, Svergun DI, PLoS One. 2013 Jul 3;8(7):e67145. doi: 10.1371/journal.pone.0067145. Print 2013. PMID:23843990
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (4ejx.pdb1.gz) 223 Kb
  • LPC: Ligand-Protein Contacts for 4EJX
  • CSU: Contacts of Structural Units for 4EJX
  • Structure Factors (246 Kb)
  • Retrieve 4EJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EJX from S2C, [Save to disk]
  • Re-refined 4ejx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EJX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EJX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ejx_D] [4ejx_B] [4ejx] [4ejx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4EJX
  • Community annotation for 4EJX at PDBWiki (http://pdbwiki.org)

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