| Data retrieval |
- Asymmetric unit, PDB entry:
[header only] [complete with coordinates] (117 Kb) [Save to disk]
 - Biological Unit Coordinates (4ekk.pdb1.gz) 57 Kb
- Biological Unit Coordinates (4ekk.pdb2.gz) 57 Kb
- LPC: Ligand-Protein Contacts for 4EKK
- CSU: Contacts of Structural Units for 4EKK
- Structure Factors (302 Kb)
- Retrieve 4EKK in mmCIF format [Save to disk]
- SEQRES to COORDINATES
correlation for 4EKK
from S2C,
[Save to disk]
- Re-refined 4ekk structure
from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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| View 4EKK in 3D |
-
Proteopedia, because life has more than 2D.
- On Jmol, a nice Rasmol like molecule viewer.
This is good for easiest viewing of basic structure.
- On FirstGlance, an
excellent tool for a guided tour on the structure components, by
E. Martz.
- On AstexViewer, from
MSD-EBI
(viewer documentation).
- On RasMol
(Install RasMol freeware)
Here's help on
how to use RasMol.
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| Visual 3D analysis of 4EKK |
- Cartoon
representation from PDB Cartoon
- Ramachandran
plot from PDBSum
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| Structure-derived information |
- Electron Density
related parameters from EDS Electron Density Server, at Upsala
- Dipole moment, from Dipole Server at Weizmann Institute
- Crystal Contacts, from CryCo at Weizmann Institute
- 3D motif for 4EKK,
from MSDmotif at EBI
- Fold representative 4ekk from FSSP and Dali (Families of Structurally Similar Proteins)
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| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [4ekk_A] [4ekk_B] [4ekk_C] [4ekk_D]
- SWISS-PROT database:
- Domain organization of by SWISSPFAM
- Alignments of the sequence of 4EKK with the sequences
similar proteins can be viewed for 4EKK's classification at ProtoMap.
Click on "Neighbors List", then on the "See Alignments" button below the list.
- A sequence distance tree ("phylogenetic tree")
can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
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Other resources with information on 4EKK |
- Community annotation for 4EKK at PDBWiki (http://pdbwiki.org)
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| Movements, Movies and Images |
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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