4EKL Transferase date Apr 09, 2012
title Akt1 With Gdc0068
authors W.I.Wu, G.P.A Vigers, T.H.Morales, B.J.Brandhuber
compound source
Molecule: Rac-Alpha Serinethreonine-Protein Kinase
Chain: A
Fragment: Unp Residues 144-480
Synonym: Protein Kinase B, Pkb, Protein Kinase B Alpha, Pkb Proto-Oncogene C-Akt, Rac-Pk-Alpha;
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akt1, Pkb, Rac
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.031 57.949 151.610 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 0RF, TPO BindingDB enzyme Transferase E.C.2.7.11.1 BRENDA
Primary referenceAn ATP-Site On-Off Switch That Restricts Phosphatase Accessibility of Akt., Lin K, Lin J, Wu WI, Ballard J, Lee BB, Gloor SL, Vigers GP, Morales TH, Friedman LS, Skelton N, Brandhuber BJ, Sci Signal. 2012 May 8;5(223):ra37. PMID:22569334
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (4ekl.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4EKL
  • CSU: Contacts of Structural Units for 4EKL
  • Structure Factors (357 Kb)
  • Retrieve 4EKL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EKL from S2C, [Save to disk]
  • Re-refined 4ekl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EKL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EKL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EKL, from MSDmotif at EBI
  • Fold representative 4ekl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ekl] [4ekl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4EKL: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 4EKL
  • Community annotation for 4EKL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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