4EKZ Crystal structure of reduced hPDI (abb'xa') date 2012-04-10
authors Wang, C., Li, W., Ren, J., Ke, H., Gong, W., Feng, W., Wang, C.C.
compound source
symmetry
R_factor
R_Free 0.2502
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.51
Gene
Ontology
ChainFunctionProcessComponent
A
  • peptide disulfide oxidoreduc...
  • thiol oxidase activity


    • Primary referenceStructural Insights into the Redox-Regulated Dynamic Conformations of Human Protein Disulfide Isomerase., Wang C, Li W, Ren J, Fang J, Ke H, Gong W, Feng W, Wang CC, Antioxid Redox Signal. 2012 Jul 9. PMID:22657537
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (4ekz.pdb1.gz) 154 Kb
  • CSU: Contacts of Structural Units for 4EKZ
  • Structure Factors (237 Kb)
  • Retrieve 4EKZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EKZ from S2C, [Save to disk]
  • Re-refined 4ekz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EKZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EKZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EKZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ekz] [4ekz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EKZ
  • Community annotation for 4EKZ at PDBWiki (http://pdbwiki.org)

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