4ELU Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines date 2012-04-11
authors Marx, A., Diederichs, K., Obeid, S.
compound source
symmetry
R_factor
R_Free 0.1825
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 0R6, ACT, DDG, GOL, MG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInteractions of non-polar and "Click-able" nucleotides in the confines of a DNA polymerase active site., Obeid S, Busskamp H, Welte W, Diederichs K, Marx A, Chem Commun (Camb). 2012 Aug 28;48(67):8320-2. Epub 2012 Jul 6. PMID:22766607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (4elu.pdb1.gz) 197 Kb
  • LPC: Ligand-Protein Contacts for 4ELU
  • CSU: Contacts of Structural Units for 4ELU
  • Structure Factors (313 Kb)
  • Retrieve 4ELU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ELU from S2C, [Save to disk]
  • Re-refined 4elu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ELU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ELU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ELU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4elu] [4elu_C] [4elu_A] [4elu_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ELU: [POLAc ] by SMART
  • Other resources with information on 4ELU
  • Community annotation for 4ELU at PDBWiki (http://pdbwiki.org)

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