OCA Atlas for 4EM9

4EM9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, KNA, TCE

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Medium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) gamma activators and pan-PPAR partial agonists., Liberato MV, Nascimento AS, Ayers SD, Lin JZ, Cvoro A, Silveira RL, Martinez L, Souza PC, Saidemberg D, Deng T, Amato AA, Togashi M, Hsueh WA, Phillips K, Palma MS, Neves FA, Skaf MS, Webb P, Polikarpov I, PLoS One. 2012;7(5):e36297. doi: 10.1371/journal.pone.0036297. Epub 2012 May 23. PMID:22649490

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]

Biological Unit Coordinates (4em9.pdb1.gz) 94 Kb

Biological Unit Coordinates (4em9.pdb2.gz) 88 Kb

Biological Unit Coordinates (4em9.pdb3.gz) 357 Kb

LPC: Ligand-Protein Contacts for 4EM9

CSU: Contacts of Structural Units for 4EM9

Structure Factors (664 Kb)

Retrieve 4EM9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4EM9 from S2C, [Save to disk]

Re-refined 4em9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4EM9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4em9] [4em9_A] [4em9_B]

SWISS-PROT database:

Domain found in 4EM9: [HOLI ] by SMART

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