4EM9 Human PPAR gamma in complex with nonanoic acids date 2012-04-11
authors Liberato, M.V., Nascimento, A.S., Polikarpov, I.
compound source
symmetry
R_factor
R_Free 0.2351
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand GOL, KNA, TCE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMedium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) gamma activators and pan-PPAR partial agonists., Liberato MV, Nascimento AS, Ayers SD, Lin JZ, Cvoro A, Silveira RL, Martinez L, Souza PC, Saidemberg D, Deng T, Amato AA, Togashi M, Hsueh WA, Phillips K, Palma MS, Neves FA, Skaf MS, Webb P, Polikarpov I, PLoS One. 2012;7(5):e36297. doi: 10.1371/journal.pone.0036297. Epub 2012 May 23. PMID:22649490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (4em9.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (4em9.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (4em9.pdb3.gz) 357 Kb
  • LPC: Ligand-Protein Contacts for 4EM9
  • CSU: Contacts of Structural Units for 4EM9
  • Structure Factors (664 Kb)
  • Retrieve 4EM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EM9 from S2C, [Save to disk]
  • Re-refined 4em9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EM9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EM9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4em9] [4em9_A] [4em9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EM9: [HOLI ] by SMART
    • Other resources with information on 4EM9
  • Community annotation for 4EM9 at PDBWiki (http://pdbwiki.org)

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