4EMO Protein Binding date Apr 12, 2012
title Crystal Structure Of The Ph Domain Of Sharpin
authors B.Stieglitz, L.F.Haire, I.Dikic, K.Rittinger
compound source
Molecule: Sharpin
Chain: A, B, C, D
Synonym: Shank-Associated Rh Domain-Interacting Protein, Sh Interacting Protein-Like 1, Hsipl1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Psec0216, Sharpin, Sipl1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t1
symmetry Space Group: P 43 21 2
R_factor 0.209 R_Free 0.269
length a length b length c angle alpha angle beta angle gamma
61.550 61.550 222.813 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE enzyme
Primary referenceStructural analysis of SHARPIN, a subunit of a large multi-protein E3 ubiquitin ligase, reveals a novel dimerization function for the pleckstrin homology superfold., Stieglitz B, Haire LF, Dikic I, Rittinger K, J Biol Chem. 2012 May 1. PMID:22549881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (4emo.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (4emo.pdb2.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 4EMO
  • CSU: Contacts of Structural Units for 4EMO
  • Structure Factors (841 Kb)
  • Retrieve 4EMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EMO from S2C, [Save to disk]
  • Re-refined 4emo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EMO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EMO, from MSDmotif at EBI
  • Fold representative 4emo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4emo_C] [4emo_D] [4emo] [4emo_B] [4emo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4EMO
  • Community annotation for 4EMO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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