4ENM Dna Binding Protein Dna date Apr 13, 2012
title Crystal Structure Of S. Pombe Atl1 In Complex With Damaged D Containing O6-Benzylguanine
authors J.L.Tubbs, A.S.Arvai, J.A.Tainer
compound source
Molecule: Alkyltransferase-Like Protein 1
Chain: A
Engineered: Yes
Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 284812
Strain: 972 Atcc 24843
Gene: Atl1, Spac1250.04c
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpcpcpaptpgp(Bzg)Pcptpapgpt
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Cptpapcptpapgpcpcpaptpgpg)
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 61 2 2
R_factor 0.173 R_Free 0.253
length a length b length c angle alpha angle beta angle gamma
59.900 59.900 237.051 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.84 Å
ligand BZG enzyme

Primary referenceAtl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines., Latypov VF, Tubbs JL, Watson AJ, Marriott AS, McGown G, Thorncroft M, Wilkinson OJ, Senthong P, Butt A, Arvai AS, Millington CL, Povey AC, Williams DM, Santibanez-Koref MF, Tainer JA, Margison GP, Mol Cell. 2012 May 31. PMID:22658721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4enm.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 4ENM
  • CSU: Contacts of Structural Units for 4ENM
  • Structure Factors (68 Kb)
  • Retrieve 4ENM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ENM from S2C, [Save to disk]
  • Re-refined 4enm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ENM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ENM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4ENM, from MSDmotif at EBI
  • Fold representative 4enm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4enm_B] [4enm_C] [4enm] [4enm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ENM
  • Community annotation for 4ENM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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