4EO7 Protein Binding date Apr 13, 2012
title Crystal Structure Of The Tir Domain Of Human Myeloid Differe Primary Response Protein 88.
authors G.A.Snyder, C.Cirl, J.S.Jiang, P.Chen, T.Smith, T.S.Xiao
compound source
Molecule: Myeloid Differentiation Primary Response Protein
Chain: A
Fragment: Tir Domain, Unp Residues 157-296
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myd88
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a
symmetry Space Group: P 21 21 21
R_factor 0.168 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.876 56.810 66.664 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand CSO, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular mechanisms for the subversion of MyD88 signaling by TcpC from virulent uropathogenic Escherichia coli., Snyder GA, Cirl C, Jiang J, Chen K, Waldhuber A, Smith P, Rommler F, Snyder N, Fresquez T, Durr S, Tjandra N, Miethke T, Xiao TS, Proc Natl Acad Sci U S A. 2013 Apr 8. PMID:23569230
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (4eo7.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 4EO7
  • CSU: Contacts of Structural Units for 4EO7
  • Structure Factors (188 Kb)
  • Retrieve 4EO7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EO7 from S2C, [Save to disk]
  • Re-refined 4eo7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EO7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EO7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EO7, from MSDmotif at EBI
  • Fold representative 4eo7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eo7_A] [4eo7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EO7: [TIR ] by SMART
  • Other resources with information on 4EO7
  • Community annotation for 4EO7 at PDBWiki (http://pdbwiki.org)

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