4EOZ Protein Binding date Apr 16, 2012
title Crystal Structure Of The Spop Btb Domain Complexed With The Terminal Domain
authors G.G.Prive, W.J.Errington
compound source
Molecule: Speckle-Type Poz Protein
Chain: A, C
Fragment: Btb Domain From Spop, Unp Residues 177-319
Synonym: Hib Homolog 1, Roadkill Homolog 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spop
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Cullin-3
Chain: B, D
Fragment: N-Terminal Domain From Cul3, Unp Residue 20-381
Synonym: Cul-3
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cul3, Kiaa0617
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: C 1 2 1
R_factor 0.211 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
213.166 76.944 85.834 90.00 108.34 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, B


Primary referenceAdaptor protein self-assembly drives the control of a cullin-RING ubiquitin ligase., Errington WJ, Khan MQ, Bueler SA, Rubinstein JL, Chakrabartty A, Prive GG, Structure. 2012 Jul 3;20(7):1141-53. Epub 2012 May 24. PMID:22632832
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (4eoz.pdb1.gz) 292 Kb
  • Biological Unit Coordinates (4eoz.pdb2.gz) 147 Kb
  • Biological Unit Coordinates (4eoz.pdb3.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 4EOZ
  • CSU: Contacts of Structural Units for 4EOZ
  • Structure Factors (741 Kb)
  • Retrieve 4EOZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EOZ from S2C, [Save to disk]
  • Re-refined 4eoz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EOZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EOZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4EOZ, from MSDmotif at EBI
  • Fold representative 4eoz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eoz_D] [4eoz_C] [4eoz_A] [4eoz_B] [4eoz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EOZ: [BTB ] by SMART
  • Other resources with information on 4EOZ
  • Community annotation for 4EOZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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