4ET7 Transferase date Apr 24, 2012
title Crystal Structure Of Eph Receptor 5
authors J.H.Shi, W.L.Zhu, J.X.Song
compound source
Molecule: Ephrin Type-A Receptor 5
Chain: A
Fragment: Unp Residues 59-235
Synonym: Brain-Specific Kinase, Eph Homology Kinase 1, Ehk- Like Kinase 7, Ek7, Hek7;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bsk, Ehk1, Epha5, Hek7, Tyro4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-Gami (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.040 82.721 81.166 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (4et7.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 4ET7
  • Structure Factors (73 Kb)
  • Retrieve 4ET7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ET7 from S2C, [Save to disk]
  • Re-refined 4et7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ET7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ET7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4ET7, from MSDmotif at EBI
  • Fold representative 4et7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4et7] [4et7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ET7: [EPH_lbd ] by SMART
  • Other resources with information on 4ET7
  • Community annotation for 4ET7 at PDBWiki (http://pdbwiki.org)

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