4ETO Metal Binding Protein date Apr 24, 2012
title Structure Of S100a4 In Complex With Non-Muscle Myosin-Iia Pe
authors U.A.Ramagopal, N.G.Dulyaninova, P.R.Kumar, S.C.Almo, A.R.Bresnic York Structural Genomics Research Consortium (Nysgrc), Atoms Animals: The Immune Function Network (Ifn)
compound source
Molecule: Protein S100-A4
Chain: A, B
Fragment: Unp Residues 1-93
Synonym: Calvasculin, Metastasin, Placental Calcium-Binding Protein Mts1, S100 Calcium-Binding Protein A4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Capl, Mts1, S100a4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet23a)

Molecule: Myosin-9
Chain: P
Fragment: Coiled Coil Region Residues 1908-1923
Synonym: Cellular Myosin Heavy Chain, Type A, Myosin Heavy Myosin Heavy Chain, Non-Muscle Iia, Non-Muscle Myosin Heavy Nmmhc-A, Non-Muscle Myosin Heavy Chain Iia, Nmmhc II-A, Nmm
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myh9
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.279 91.989 32.864 90.00 112.60 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4eto.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 4ETO
  • CSU: Contacts of Structural Units for 4ETO
  • Structure Factors (346 Kb)
  • Retrieve 4ETO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ETO from S2C, [Save to disk]
  • Re-refined 4eto structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ETO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ETO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4ETO, from MSDmotif at EBI
  • Fold representative 4eto from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eto] [4eto_P] [4eto_B] [4eto_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4ETO
  • Community annotation for 4ETO at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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