4EWI Crystal structure of the NLRP4 Pyrin domain date
authors Eibl, C., Hessenberger, M., Puehringer, S., Page, R., Diederichs, K., Peti, W.
compound source
symmetry
R_factor
R_Free 0.2455
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.28
ligand CL, SO4 enzyme
Primary referenceStructural and Functional Analysis of the NLRP4 Pyrin domain., Eibl C, Grigoriu S, Hessenberger M, Wenger J, Puehringer S, Pinheiro A, Wagner RN, Proell M, Reed JC, Page R, Diederichs K, Peti W, Biochemistry. 2012 Aug 28. PMID:22928810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4ewi.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (4ewi.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (4ewi.pdb3.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 4EWI
  • CSU: Contacts of Structural Units for 4EWI
  • Structure Factors (73 Kb)
  • Retrieve 4EWI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EWI from S2C, [Save to disk]
  • Re-refined 4ewi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EWI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EWI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EWI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ewi] [4ewi_A] [4ewi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EWI: [PYRIN ] by SMART
    • Other resources with information on 4EWI
  • Community annotation for 4EWI at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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