OCA Atlas for 4YNO

4YNO

Crystal structure of MAPK13 at INACTIVE FORM

date

authors

Miller, C.A., Brett, T.J.

compound

source

symmetry

R_factor

R_Free

0.2245

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

1.70

note

4YNO supersedes 4EXU

Gene
Ontology

Chain	Function	Process	Component
A		positive regulation of inter...

Primary reference

IL-13-induced airway mucus production is attenuated by MAPK13 inhibition., Alevy YG, Patel AC, Romero AG, Patel DA, Tucker J, Roswit WT, Miller CA, Heier RF, Byers DE, Brett TJ, Holtzman MJ, J Clin Invest. 2012 Dec 3;122(12):4555-68. doi: 10.1172/JCI64896. Epub 2012 Nov, 26. PMID:23187130

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]

Biological Unit Coordinates (4yno.pdb1.gz) 62 Kb

CSU: Contacts of Structural Units for 4YNO

Structure Factors (910 Kb)

Retrieve 4YNO in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4YNO from S2C, [Save to disk]

Re-refined 4yno structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4YNO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4YNO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 4YNO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4yno] [4yno_A]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domain found in 4YNO: [S_TKc ] by SMART

Other resources with information on 4YNO

Community annotation for 4YNO at PDBWiki (http://pdbwiki.org)

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