4EYI Human DNA polymerase iota incorporating dATP opposite N-(deoxyguanosin-8-yl)-1-aminopyrene lesion date 2012-05-01
authors Kirouac, K., Ling, H.
compound source
symmetry
R_factor
R_Free 0.2637
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand DG8, DTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceReplication of a carcinogenic nitropyrene DNA lesion by human Y-family DNA polymerase., Kirouac KN, Basu AK, Ling H, Nucleic Acids Res. 2012 Dec 24. PMID:23268450
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (4eyi.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 4EYI
  • CSU: Contacts of Structural Units for 4EYI
  • Structure Factors (99 Kb)
  • Retrieve 4EYI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EYI from S2C, [Save to disk]
  • Re-refined 4eyi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EYI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EYI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EYI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eyi_P] [4eyi_T] [4eyi] [4eyi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4EYI
  • Community annotation for 4EYI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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