4EZ6 Bacillus DNA Polymerase I Large Fragment Complex 1 date 2012-05-02
authors Wang, W., Beese, L.S.
compound source
symmetry
R_factor
R_Free 0.1922
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.64
ligand DDG, DG3, MPD, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceStructural evidence for the rare tautomer hypothesis of spontaneous mutagenesis., Wang W, Hellinga HW, Beese LS, Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17644-8. Epub 2011 Oct 17. PMID:22006298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (621 Kb) [Save to disk]
  • Biological Unit Coordinates (4ez6.pdb1.gz) 301 Kb
  • Biological Unit Coordinates (4ez6.pdb2.gz) 315 Kb
  • LPC: Ligand-Protein Contacts for 4EZ6
  • CSU: Contacts of Structural Units for 4EZ6
  • Structure Factors (1914 Kb)
  • Retrieve 4EZ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EZ6 from S2C, [Save to disk]
  • Re-refined 4ez6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EZ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EZ6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EZ6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ez6_A] [4ez6_F] [4ez6_E] [4ez6_D] [4ez6_C] [4ez6] [4ez6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4EZ6: [35EXOc] [POLAc ] by SMART
  • Other resources with information on 4EZ6
  • Community annotation for 4EZ6 at PDBWiki (http://pdbwiki.org)

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