4F1Z Cell Adhesion date May 07, 2012
title Crystal Structures Reveal The Multi-Ligand Binding Mechanism Staphylococcus Aureus Clfb
authors M.J.Yang, H.Xiang, J.W.Wang, B.Liu, Y.G.Chen, L.Liu, X.M.Deng, Y.Fe
compound source
Molecule: Clumping Factor B
Chain: A
Fragment: N2 N3 Domain, Unp Residues 197-542
Synonym: Fibrinogen Receptor B, Fibrinogen-Binding Protein
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 282458
Strain: Mrsa252
Gene: Clfb, Sar2709
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid

Molecule: Peptide From Keratin, Type I Cytoskeletal 10
Chain: Q
Fragment: Tail Region, Unp Residues 473-486
Synonym: Cytokeratin-10, Ck-10, Keratin-10, K10
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: P 31 2 1
R_factor 0.247 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.331 70.331 177.157 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures Reveal the Multi-Ligand Binding Mechanism of Staphylococcus aureus ClfB., Xiang H, Feng Y, Wang J, Liu B, Chen Y, Liu L, Deng X, Yang M, PLoS Pathog. 2012 Jun;8(6):e1002751. Epub 2012 Jun 14. PMID:22719251
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4f1z.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 4F1Z
  • CSU: Contacts of Structural Units for 4F1Z
  • Structure Factors (271 Kb)
  • Retrieve 4F1Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F1Z from S2C, [Save to disk]
  • Re-refined 4f1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F1Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F1Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4F1Z, from MSDmotif at EBI
  • Fold representative 4f1z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f1z_Q] [4f1z_A] [4f1z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4F1Z
  • Community annotation for 4F1Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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