4F2J Metal Binding Protein Dna date May 08, 2012
title Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal Form
authors M.S.Vandevenne, D.A.Jacques, J.M.Guss, J.P.Mackay
compound source
Molecule: 5'-D(Tptptpgpcpapgpapaptpcpgpaptpt Cpa)-3';
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: Zinc Finger Protein 217
Chain: C
Fragment: Zinc Fingers 6 And 7 (Unp Residues 469-523)
Synonym: Transcription Factor Znf217
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Znf217, Zabc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal
symmetry Space Group: P 65 2 2
R_factor 0.252 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.928 56.928 242.542 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.64 Å
ligand ZN enzyme
Primary referenceNew insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217., Vandevenne M, Jacques DA, Artuz C, Nguyen CD, Kwan AH, Segal DJ, Matthews JM, Crossley M, Guss JM, Mackay JP, J Biol Chem. 2013 Apr 12;288(15):10616-27. doi: 10.1074/jbc.M112.441451. Epub, 2013 Feb 22. PMID:23436653
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (4f2j.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4F2J
  • CSU: Contacts of Structural Units for 4F2J
  • Structure Factors (313 Kb)
  • Retrieve 4F2J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F2J from S2C, [Save to disk]
  • Re-refined 4f2j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F2J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F2J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4F2J, from MSDmotif at EBI
  • Fold representative 4f2j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f2j_C] [4f2j_A] [4f2j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F2J: [ZnF_C2H2 ] by SMART
  • Other resources with information on 4F2J
  • Community annotation for 4F2J at PDBWiki (http://pdbwiki.org)

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