4F3F Crystal Structure of Msln7-64 MORAb-009 FAB complex date
authors Xia, D., Pastan, I., Ma, J., Tang, W.K., Esser, L.
compound source
symmetry
R_factor
R_Free 0.2220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand PCA enzyme
Primary referenceRecognition of mesothelin by the therapeutic antibody MORAb-009: structural and mechanistic insights., Ma J, Tang WK, Esser L, Pastan I, Xia D, J Biol Chem. 2012 Sep 28;287(40):33123-31. Epub 2012 Jul 11. PMID:22787150
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (4f3f.pdb1.gz) 226 Kb
  • LPC: Ligand-Protein Contacts for 4F3F
  • CSU: Contacts of Structural Units for 4F3F
  • Structure Factors (1053 Kb)
  • Retrieve 4F3F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F3F from S2C, [Save to disk]
  • Re-refined 4f3f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F3F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F3F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F3F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f3f] [4f3f_B] [4f3f_C] [4f3f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4F3F: [IG_like] [IGv ] by SMART
  • Other resources with information on 4F3F
  • Community annotation for 4F3F at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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