4F4K DNA Polymerase I Large Fragment Complex 6 date 2012-05-10
authors Wang, W., Beese, L.S.
compound source
symmetry
R_factor
R_Free 0.1941
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand DDG, DG3, MN, MPD, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceStructural evidence for the rare tautomer hypothesis of spontaneous mutagenesis., Wang W, Hellinga HW, Beese LS, Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17644-8. Epub 2011 Oct 17. PMID:22006298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (640 Kb) [Save to disk]
  • Biological Unit Coordinates (4f4k.pdb1.gz) 316 Kb
  • Biological Unit Coordinates (4f4k.pdb2.gz) 319 Kb
  • LPC: Ligand-Protein Contacts for 4F4K
  • CSU: Contacts of Structural Units for 4F4K
  • Structure Factors (1344 Kb)
  • Retrieve 4F4K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F4K from S2C, [Save to disk]
  • Re-refined 4f4k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F4K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F4K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F4K, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f4k_C] [4f4k_A] [4f4k_E] [4f4k] [4f4k_F] [4f4k_B] [4f4k_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4F4K: [35EXOc] [POLAc ] by SMART
  • Other resources with information on 4F4K
  • Community annotation for 4F4K at PDBWiki (http://pdbwiki.org)

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