OCA Atlas for 4F58

4F58

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

SO4

enzyme

Primary reference

Viral Escape from Neutralizing Antibodies in Early Subtype A HIV-1 Infection Drives an Increase in Autologous Neutralization Breadth., Murphy MK, Yue L, Pan R, Boliar S, Sethi A, Tian J, Pfafferot K, Karita E, Allen SA, Cormier E, Goepfert PA, Borrow P, Robinson JE, Gnanakaran S, Hunter E, Kong XP, Derdeyn CA, PLoS Pathog. 2013 Feb;9(2):e1003173. doi: 10.1371/journal.ppat.1003173. Epub 2013, Feb 28. PMID:23468623

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]

Biological Unit Coordinates (4f58.pdb1.gz) 73 Kb

Biological Unit Coordinates (4f58.pdb2.gz) 73 Kb

Biological Unit Coordinates (4f58.pdb3.gz) 73 Kb

Biological Unit Coordinates (4f58.pdb4.gz) 74 Kb

LPC: Ligand-Protein Contacts for 4F58

CSU: Contacts of Structural Units for 4F58

Structure Factors (1180 Kb)

Retrieve 4F58 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4F58 from S2C, [Save to disk]

Re-refined 4f58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4F58 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4f58] [4f58_H] [4f58_I] [4f58_J] [4f58_K] [4f58_L] [4f58_M] [4f58_N] [4f58_O]

SWISS-PROT database:

Domains found in 4F58: [IG_like] [IGv ] by SMART

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