4F5Z Crystal structure of Rhodococcus rhodochrous haloalkane dehalogenase mutant (L95V, A172V). date 2012-05-14
authors Kulik, D., Kuta-Smatanova, I., Rezacova, P.
compound source
symmetry
R_factor
R_Free 0.15495
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.20
ligand BEZ, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering Enzyme Stability and Resistance to an Organic Cosolvent by Modification of Residues in the Access Tunnel., Koudelakova T, Chaloupkova R, Brezovsky J, Prokop Z, Sebestova E, Hesseler M, Khabiri M, Plevaka M, Kulik D, Kuta Smatanova I, Rezacova P, Ettrich R, Bornscheuer UT, Damborsky J, Angew Chem Int Ed Engl. 2013 Jan 9. doi: 10.1002/anie.201206708. PMID:23303607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (4f5z.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 4F5Z
  • CSU: Contacts of Structural Units for 4F5Z
  • Structure Factors (1115 Kb)
  • Retrieve 4F5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F5Z from S2C, [Save to disk]
  • Re-refined 4f5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F5Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F5Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f5z] [4f5z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4F5Z
  • Community annotation for 4F5Z at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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