4F63 Crystal structure of Human Fibroblast Growth Factor Receptor 1 Kinase domain in complex with compound 1 date 2012-05-14
authors Norman, R.A., Breed, J., Ogg, D.
compound source
symmetry
R_factor
R_Free 0.28741
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand 0S7, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceProtein-Ligand Crystal Structures Can Guide the Design of Selective Inhibitors of the FGFR Tyrosine Kinase., Norman RA, Schott AK, Andrews DM, Breed J, Foote KM, Garner AP, Ogg D, Orme JP, Pink JH, Roberts K, Rudge DA, Thomas AP, Leach AG, J Med Chem. 2012 May 21. PMID:22612866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (4f63.pdb1.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 4F63
  • CSU: Contacts of Structural Units for 4F63
  • Structure Factors (737 Kb)
  • Retrieve 4F63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F63 from S2C, [Save to disk]
  • Re-refined 4f63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F63
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F63, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f63] [4f63_A] [4f63_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F63: [TyrKc ] by SMART
    • Other resources with information on 4F63
  • Community annotation for 4F63 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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