4F6M Crystal structure of Kaiso zinc finger DNA binding domain in complex with Kaiso binding site DNA date 2012-05-15
authors Buck-Koehntop, B.A., Stanfield, R.L., Ekiert, D.C., Martinez-Yamout, M.A., Dyson, H.J., Wilson, I.A., Wright, P.E.
compound source
symmetry
R_factor
R_Free 0.23986
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand ZN enzyme
Primary referenceMolecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso., Buck-Koehntop BA, Stanfield RL, Ekiert DC, Martinez-Yamout MA, Dyson HJ, Wilson IA, Wright PE, Proc Natl Acad Sci U S A. 2012 Sep 4. PMID:22949637
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (4f6m.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4F6M
  • CSU: Contacts of Structural Units for 4F6M
  • Structure Factors (273 Kb)
  • Retrieve 4F6M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F6M from S2C, [Save to disk]
  • Re-refined 4f6m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F6M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F6M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F6M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f6m] [4f6m_A] [4f6m_E] [4f6m_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F6M: [ZnF_C2H2 ] by SMART
    • Other resources with information on 4F6M
  • Community annotation for 4F6M at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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