4F7H The crystal structure of kindlin-2 pleckstrin homology domain in free form date 2012-05-16
authors Liu, Y., Zhu, Y., Qin, J., Ye, S., Zhang, R.
compound source
symmetry
R_factor
R_Free 0.2241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand SRT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of kindlin-2 PH domain reveals a conformational transition for its membrane anchoring and regulation of integrin activation., Liu Y, Zhu Y, Ye S, Zhang R, Protein Cell. 2012 May 31. PMID:22653426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (4f7h.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 4F7H
  • CSU: Contacts of Structural Units for 4F7H
  • Structure Factors (169 Kb)
  • Retrieve 4F7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F7H from S2C, [Save to disk]
  • Re-refined 4f7h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F7H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F7H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f7h_A] [4f7h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F7H: [PH ] by SMART
  • Other resources with information on 4F7H
  • Community annotation for 4F7H at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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