4F8D Crystal Structure of an R46A mutant of the Restriction-Modification Controller Protein C.Esp1396I (Monoclinic Form) date 2012-05-17
authors Martin, R.N.A., McGeehan, J.E., Kneale, G.G.
compound source
symmetry
R_factor
R_Free 0.2002
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand NA, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I., Martin RN, McGeehan JE, Kneale G, PLoS One. 2014 Jun 2;9(6):e98365. doi: 10.1371/journal.pone.0098365. eCollection , 2014. PMID:24887147
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (4f8d.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (4f8d.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 4F8D
  • CSU: Contacts of Structural Units for 4F8D
  • Structure Factors (397 Kb)
  • Retrieve 4F8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F8D from S2C, [Save to disk]
  • Re-refined 4f8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F8D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4F8D, from MSDmotif at EBI
  • Fold representative 4f8d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f8d] [4f8d_B] [4f8d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F8D: [HTH_XRE ] by SMART
  • Other resources with information on 4F8D
  • Community annotation for 4F8D at PDBWiki (http://pdbwiki.org)

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