4F8O X-ray structure of PsaA from Yersinia pestis, in complex with lactose and AEBSF date
authors Bao, R., Esser, L., Xia, D.
compound source
symmetry
R_factor
R_Free 0.2863
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand AES, BGC, CL, GAI, GAL enzyme
Gene YP
Primary referenceStructural basis for the specific recognition of dual receptors by the homopolymeric pH 6 antigen (Psa) fimbriae of Yersinia pestis., Bao R, Nair MK, Tang WK, Esser L, Sadhukhan A, Holland RL, Xia D, Schifferli DM, Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):1065-70. doi:, 10.1073/pnas.1212431110. Epub 2012 Dec 31. PMID:23277582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (4f8o.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 4F8O
  • CSU: Contacts of Structural Units for 4F8O
  • Structure Factors (205 Kb)
  • Retrieve 4F8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F8O from S2C, [Save to disk]
  • Re-refined 4f8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F8O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F8O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f8o] [4f8o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4F8O
  • Community annotation for 4F8O at PDBWiki (http://pdbwiki.org)

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