4FA2 Human P38 alpha Mitogen-Activated Kinase In Complex With SB239063 date
authors Grum-Tokars, V.L., Minasov, G., Anderson, W.F., Watterson, D.M.
compound source
symmetry
R_factor
R_Free 0.21454
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand BME, EDO, GG5, SB0 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of Novel Chemical Probes to Address CNS Protein Kinase Involvement in Synaptic Dysfunction., Watterson DM, Grum-Tokars VL, Roy SM, Schavocky JP, Bradaric BD, Bachstetter AD, Xing B, Dimayuga E, Saeed F, Zhang H, Staniszewski A, Pelletier JC, Minasov G, Anderson WF, Arancio O, Van Eldik LJ, PLoS One. 2013 Jun 26;8(6):e66226. Print 2013. PMID:23840427
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (4fa2.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 4FA2
  • CSU: Contacts of Structural Units for 4FA2
  • Structure Factors (361 Kb)
  • Retrieve 4FA2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FA2 from S2C, [Save to disk]
  • Re-refined 4fa2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FA2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FA2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FA2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i4fa2, region A:1-181 [Jmol] [rasmolscript] [script source]
        - Domain d1d4fa2, region A:2-189,A:353-431 [Jmol] [rasmolscript] [script source]
        - Domain d1h4fa2, region A:254-406 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fa2] [4fa2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FA2: [S_TKc ] by SMART
    • Other resources with information on 4FA2
  • Community annotation for 4FA2 at PDBWiki (http://pdbwiki.org)

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