4FAP	Cell Cycle	date	May 06, 1999
title	Atomic Structures Of The Rapamycin Analogs In Complex With B Fkbp12 And Frb Domain Of Frap
authors	J.Liang, J.Clardy
compound		source
Molecule: Fk506-Binding Protein Chain: A Synonym: Fkbp12 Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Strain: Bl21 (De3) (Novagen) Gene: Human Hippocampal Cdna Library Source 8 (Clontech, Pa Ca); Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) (Novagen) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-3x
Molecule: Fkbp12-Rapamycin Associated Protein Chain: B Fragment: Frb Synonym: Frap		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.184 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.400 52.100 102.560 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	ARD	enzyme	Isomerase E.C.5.2.1.8 BRENDA
related structures	by homologous chain: 1FAP, 1QPL
Gene Ontology	Chain Function Process Component A B
Primary reference	Refined structure of the FKBP12-rapamycin-FRB ternary complex at 2.2 A resolution., Liang J, Choi J, Clardy J, Acta Crystallogr D Biol Crystallogr 1999 Apr;55 ( Pt 4):736-44. PMID:10089303

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (4fap.pdb1.gz) 34 Kb LPC: Ligand-Protein Contacts for 4FAP CSU: Contacts of Structural Units for 4FAP Likely Quarternary Molecular Structure file(s) for 4FAP Structure Factors (28 Kb) Retrieve 4FAP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4FAP from S2C, [Save to disk] Re-refined 4fap structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4FAP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4FAP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4FAP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d4fapa_, region A [Jmol] [rasmolscript] [script source]     - Domain d4fapb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4fap_B] [4fap_A] [4fap] SWISS-PROT database: [P62942] [P42345] Belongs to the immunophilin-like prolyl:peptidyl isomerase regulator (i-ppi) family according to TCDB. Domain organization of [FKB1A_HUMAN] [FRAP_HUMAN] by SWISSPFAM Domain found in 4FAP: [Rapamycin_bind ] by SMART

Other resources with information on 4FAP

Community annotation for 4FAP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---