4FC6 Studies on DCR shed new light on peroxisomal beta-oxidation: Crystal structure of the ternary complex of pDCR date 2012-05-24
authors Hua, T., Wu, D., Wang, J., Shaw, N., Liu, Z.J.
compound source
symmetry
R_factor
R_Free 0.21529
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand HXC, NAP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStudies on human 2, 4 dienoyl CoA reductase (DCR) sheds new light on peroxisomal beta-oxidation of unsaturated fatty acids., Hua T, Wu D, Ding W, Wang J, Shaw N, Liu ZJ, J Biol Chem. 2012 Jun 28. PMID:22745130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (4fc6.pdb1.gz) 182 Kb
  • LPC: Ligand-Protein Contacts for 4FC6
  • CSU: Contacts of Structural Units for 4FC6
  • Structure Factors (951 Kb)
  • Retrieve 4FC6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FC6 from S2C, [Save to disk]
  • Re-refined 4fc6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FC6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FC6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FC6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fc6] [4fc6_B] [4fc6_D] [4fc6_C] [4fc6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FC6
  • Community annotation for 4FC6 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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